UCLA Biopolymer Lab's
Frequently Asked Questions

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Q1: In your website, it said the samples can be liquids, solids or immobilized on PVDF. Our protein solution is not quite pure, there are few other protein inpurities, in this case is it better to do a PVDF sample?

Q2: If we are backing to prepare PVDF sample, after transferring the proteins to PVDF, do we need to cut the single band we are interested in or the whole lane which contains all other protein impurities?

Q3: What is the optimum protein amount for N-Terminal sequencing?

Q4: Is there anything special for sending the samples? Or we can just use the regular mail?

Q5: How do you charge for the analysis?

Q6: How many amino acids can be sequenced?












Q1: In your website, it said the samples can be liquids, solids or immobilized on PVDF. Our protein solution is not quite pure, there are few other protein inpurities, in this case is it better to do a PVDF sample?

It is best to have a pure sample, if possible. Purity should be determined by SDS-PAGE, or an equivalent method. However, if the molar amount of the desired sample substantially exceeds that of an impurity (e.g., by a factor or 100), then an impure sample can be sequenced. blotting onto a PVDF membrane of an impure sample fractionated by SDS-PAGE is a reliable method for obtaining pure material.

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Q2: If we are backing to prepare PVDF sample, after transferring the proteins to PVDF, do we need to cut the single band we are interested in or the whole lane which contains all other protein impurities?

Samples should be provided in as small a piece of PVDF as possible. if one is to err, they should err on the side of making the piece smaller than larger.

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Q3: What is the optimum protein amount for N-Terminal sequencing?

There is none, per se. a rough rule of thumb is that the higher the molecular weight, the more material is needed and the fewer the number of cycles that can be interpreted. Ideally, 100-1000 picomoles would be backod. However, depending on chemical and primary structure factors, small peptides could yield excellent sequence with substantially less than 100 picomoles.

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Q4: Is there anything special for sending the samples? Or we can just use the regular mail?

Provision of samples can be "by hand," by mail, or by courier. if samples are not dry, then they should be sent by overnight courier to the laboratory, preferably frozen on dry ice.

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Q5: How do you charge for the analysis?

We charge $250 to set the machine up and to provide up to 5 cycles of information. Each subsequent cycle costs $25. A 25% surcharge is made for non-academic samples.

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Q6: How many amino acids can be sequenced?

The answer is a function of the amount of sample (direct proportionality), its molecular weight (inverse proportionality), and its sequence. Given that answers to these questions are favorable, sequences of 50 cycles of more are possible. However, one should expect substantially fewer, on average.

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